## Error in library(future.apply) :
## there is no package called 'future.apply'
Samples: dcDNA Seq
pychopper: no
mapping version: v6
LoRTIA: yes (stranded only output)
## Bootstrap (r = 0.49)... Done.
## Bootstrap (r = 0.59)... Done.
## Bootstrap (r = 0.7)... Done.
## Bootstrap (r = 0.8)... Done.
## Bootstrap (r = 0.9)... Done.
## Bootstrap (r = 1.0)... Done.
## Bootstrap (r = 1.09)... Done.
## Bootstrap (r = 1.19)... Done.
## Bootstrap (r = 1.29)... Done.
## Bootstrap (r = 1.39)... Done.
The sample 48h_3 stands out!
## Bootstrap (r = 0.5)... Done.
## Bootstrap (r = 0.58)... Done.
## Bootstrap (r = 0.69)... Done.
## Bootstrap (r = 0.77)... Done.
## Bootstrap (r = 0.88)... Done.
## Bootstrap (r = 1.0)... Done.
## Bootstrap (r = 1.08)... Done.
## Bootstrap (r = 1.19)... Done.
## Bootstrap (r = 1.27)... Done.
## Bootstrap (r = 1.38)... Done.
## [1] "CTO" "ORF8" "ORF49" "ORF42" "ORF40" "ORF36" "ORF46"
## [8] "ORF24" "ORF44" "ORF56" "NOIR_2" "ORF23" "ORF43" "ORF58"
## [15] "ORF22" "ORF51" "ORF1" "ORF68" "ORF28" "ORF59" "ORF74"
## [22] "ORF70" "ORF39" "NOIR_1" "ORF75" "ORF9" "ORF55" "ORF38"
## [29] "ORF20" "ORF67_1" "ORF66_1" "ORF18" "ORF4" "ORF31" "ORF61"
## [36] "ORF50" "ORF32" "ORF64_1" "ORF7" "ORF76" "ORF21" "ORF19"
## [43] "ORF3" "ORF37" "ORF26" "ORF29" "ORF34" "ORF17" "ORF2"
## [50] "ORF65_1" "ORF14" "ORF69" "ORF11" "ORF5" "ORF73" "ORF12"
## [57] "ORF13" "ORF16" "ORF71" "ORF52" "ORF72" "ORF54" "ORF6"
## [64] "ORF57" "ORF41" "ORF35" "ORF60" "ORF10" "ORF15" "ORF62"
## [71] "ORF27" "ORF48" "ORF35.5" "ORF25" "ORF33" "ORF30" "ORF63"
## [78] "ORF53" "ORF45"
## [1] 79
## [1] "ORF42" "ORF49" "ORF36" "ORF40" "ORF8" "ORF56" "ORF44"
## [8] "CTO" "ORF24" "ORF23" "ORF46" "ORF43" "ORF68" "ORF22"
## [15] "ORF74" "ORF70" "ORF39" "ORF1" "ORF28" "ORF58" "NOIR_2"
## [22] "ORF9" "ORF75" "ORF55" "ORF20" "ORF38" "ORF4" "ORF67_1"
## [29] "ORF66_1" "ORF18" "ORF31" "ORF61" "ORF32" "ORF64_1" "ORF50"
## [36] "ORF76" "ORF7" "ORF37" "ORF19" "ORF3" "ORF21" "ORF26"
## [43] "ORF34" "ORF29" "ORF17" "ORF65_1" "ORF2" "ORF69" "ORF14"
## [50] "ORF5" "ORF11" "ORF73" "ORF16" "ORF13" "ORF71" "ORF12"
## [57] "ORF72" "ORF6" "ORF41" "ORF60" "ORF54" "ORF52" "ORF57"
## [64] "ORF35" "ORF10" "ORF15" "ORF27" "ORF62" "ORF48" "ORF35.5"
## [71] "ORF25" "ORF33" "ORF30" "ORF63" "ORF53" "ORF45" "ORF59"
## [78] "ORF51" "NOIR_1"
## [1] 79
## [1] "CTO" "ORF24" "ORF8" "ORF42" "ORF49" "ORF23" "ORF46"
## [8] "ORF43" "ORF44" "ORF40" "ORF36" "ORF56" "ORF22" "ORF58"
## [15] "ORF28" "ORF68" "ORF1" "ORF74" "ORF39" "ORF70" "NOIR_2"
## [22] "ORF18" "ORF38" "ORF50" "ORF20" "ORF61" "ORF21" "ORF3"
## [29] "ORF26" "ORF67_1" "ORF31" "ORF7" "ORF19" "ORF29" "ORF76"
## [36] "ORF34" "ORF2" "ORF32" "ORF66_1" "ORF17" "ORF14" "ORF64_1"
## [43] "ORF11" "ORF73" "ORF65_1" "ORF4" "ORF69" "ORF55" "ORF5"
## [50] "ORF9" "ORF37" "ORF75" "ORF16" "ORF13" "ORF71" "ORF12"
## [57] "ORF72" "ORF6" "ORF41" "ORF60" "ORF54" "ORF52" "ORF57"
## [64] "ORF35" "ORF10" "ORF15" "ORF27" "ORF62" "ORF48" "ORF35.5"
## [71] "ORF25" "ORF33" "ORF30" "ORF63" "ORF53" "ORF45" "ORF59"
## [78] "ORF51" "NOIR_1"
## [1] 79
## [1] "CTO" "ORF24" "ORF8" "ORF42" "ORF49" "ORF23" "ORF46"
## [8] "ORF43" "ORF44" "ORF40" "ORF36" "ORF56" "ORF22" "ORF58"
## [15] "ORF28" "ORF68" "ORF1" "ORF74" "ORF39" "ORF70" "NOIR_2"
## [22] "ORF18" "ORF38" "ORF50" "ORF20" "ORF61" "ORF21" "ORF3"
## [29] "ORF26" "ORF67_1" "ORF31" "ORF7" "ORF19" "ORF29" "ORF76"
## [36] "ORF34" "ORF2" "ORF32" "ORF66_1" "ORF17" "ORF14" "ORF64_1"
## [43] "ORF11" "ORF73" "ORF65_1" "ORF4" "ORF69" "ORF55" "ORF5"
## [50] "ORF9" "ORF37" "ORF75" "ORF16" "ORF13" "ORF71" "ORF12"
## [57] "ORF72" "ORF6" "ORF41" "ORF60" "ORF54" "ORF52" "ORF57"
## [64] "ORF35" "ORF10" "ORF15" "ORF27" "ORF62" "ORF48" "ORF35.5"
## [71] "ORF25" "ORF33" "ORF30" "ORF63" "ORF53" "ORF45" "ORF59"
## [78] "ORF51" "NOIR_1"
## [1] 79
## The following genes were removed from their corresponding clusters
## as their silhouette widths were lower than 0.1 and their distance from the group centroid was higher than 0.5:
## CTO
## ORF24
## ORF8
## ORF42
## ORF49
## ORF23
## ORF46
## ORF43
## ORF44
## ORF40
## ORF36
## ORF56
## ORF22
## ORF58
## ORF28
## ORF68
## ORF1
## ORF74
## ORF39
## ORF70
## NOIR_2
## ORF18
## ORF38
## ORF50
## ORF20
## ORF61
## ORF21
## ORF3
## ORF26
## ORF67_1
## ORF31
## ORF7
## ORF19
## ORF29
## ORF76
## ORF34
## ORF2
## ORF32
## ORF66_1
## ORF17
## ORF14
## ORF64_1
## ORF11
## ORF73
## ORF65_1
## ORF4
## ORF69
## ORF55
## ORF5
## ORF9
## ORF37
## ORF75
## ORF16
## ORF13
## ORF71
## ORF12
## ORF72
## ORF6
## ORF41
## ORF60
## ORF54
## ORF52
## ORF57
## ORF35
## ORF10
## ORF15
## ORF27
## ORF62
## ORF48
## ORF35.5
## ORF25
## ORF33
## ORF30
## ORF63
## ORF53
## ORF45
## ORF59
## ORF51
## NOIR_1
NA shows the number of genes where the clustering did not yield an unambiguous result.